Unit 1: Laboratory quality and organization
Clinical Biochemistry-1 notes · PTU syllabus (BMLS403-18)
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Unit summary
A clinical biochemistry laboratory must be safe, organised and reliable. This unit covers hazards and safety measures, quality control and quality assurance, and laboratory organisation, management and record keeping.
After this unit you can
- Identify hazards and apply safety measures
- Distinguish quality control and quality assurance
- Use Levey–Jennings charts and Westgard rules
- Organise a laboratory and maintain records
PTU syllabus topics
- Hazards and safety measures in the clinical biochemistry laboratory
- quality control and quality assurance
- laboratory organization
- management and record maintenance
Pre-analytical
Right patient, sample, tube, transport
Analytical
Internal QC with controls, calibration
Post-analytical
Correct reporting and turnaround
External QC
Proficiency testing against other labs
Topic 1
Hazards and safety measures
Biological
Serum, plasma, urine
Universal precautions, PPE, hepatitis B vaccination
Chemical
Acids, sodium azide, cyanide (Drabkin's), mercury, solvents
Fume hood, labelled containers, MSDS, spill kits
Electrical and mechanical
Analysers, centrifuges
Earthing, lids closed, balanced loads
Fire
Flammable solvents, gas
Extinguishers, storage cabinets
Ergonomic
Repetitive pipetting
Automated pipettes, breaks
Topic 2
Quality control and quality assurance
Scope
Whole process — pre-analytical, analytical, post-analytical
Analytical phase
Aim
Reliable results and service
Detect analytical errors before reporting
Tools
SOPs, training, audits, accreditation (NABL, ISO 15189)
Control materials, QC charts, Westgard rules
- Internal QC
- Control sera of known values run with every batch
- External quality assessment (EQAS)
- Unknown samples from an external provider (e.g., CMC Vellore, AIIMS) compared with peers
- Precision
- Closeness of repeated results (SD, CV)
- Accuracy
- Closeness to the true value
Mean
Sum of values ÷ number
Standard deviation
Spread of values around the mean
Coefficient of variation
CV% = SD ÷ mean × 100
- Levey–Jennings chart: control values plotted daily against lines for mean ± 1, 2 and 3 SD.
- 1₂s
- One value beyond 2 SD — warning
- 1₃s
- One value beyond 3 SD — reject (random error)
- 2₂s
- Two consecutive values beyond 2 SD on the same side — reject (systematic error)
- R₄s
- Range between two controls exceeds 4 SD — reject (random error)
- 4₁s
- Four consecutive beyond 1 SD on one side — reject
- 10x
- Ten consecutive on one side of the mean — reject (shift)
Example
Glucose control mean 100 mg/dL, SD 2. Today's value 107 exceeds 100 + 3 × 2 = 106 → 1₃s violation; stop reporting, find and fix the error, rerun.
Topic 3
Laboratory organisation, management and records
- 1
Test request
- 2
Patient preparation and sample collection
- 3
Sample reception, labelling, barcoding
- 4
Processing (centrifugation, aliquoting)
- 5
Analysis with QC
- 6
Technical and clinical verification
- 7
Reporting and critical-value calling
- 8
Sample storage and disposal
- Sample and test registers
- Or laboratory information system (LIS)
- QC records
- Charts and corrective actions
- Equipment logs
- Calibration, maintenance, breakdowns
- Reagent records
- Lot numbers, expiry, opening dates
- Staff records
- Training and competency
- Reports
- Retained per policy
- Management: staffing, workload, inventory, turnaround time monitoring, cost control and continuous improvement.
Key terms
- Quality assurance
- Overall system ensuring reliable laboratory results
- Internal quality control
- Running known controls with patient samples
- Levey–Jennings chart
- Plot of control results against SD limits
- Westgard rules
- Rules for accepting or rejecting QC runs
- Coefficient of variation
- SD expressed as a percentage of the mean
Quick revision
- Biological, chemical, electrical, fire, ergonomic hazards.
- QA vs QC; internal QC and EQAS; precision and accuracy.
- Mean, SD, CV; Levey–Jennings; Westgard rules.
- Workflow; records; management tasks; NABL and ISO 15189.
Important exam questions
Practice questions written to the PTU exam pattern for this unit's syllabus: short answers (Section A style) and long answers (Sections B and C style).
Short-answer questions
- Q1.Distinguish QA and QC.
- Q2.What is EQAS?
- Q3.Define coefficient of variation.
- Q4.What does the 1₃s rule indicate?
- Q5.Name three records kept in a laboratory.
- Q6.What is turnaround time?
Long-answer questions
- Q1.Describe hazards and safety measures in a clinical biochemistry laboratory.
- Q2.Explain quality control with Levey–Jennings charts and Westgard rules.
- Q3.Describe the organisation and record keeping of a laboratory.
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