Unit 4: Bacterial classification, growth and culture
General Microbiology notes · PTU syllabus (BMLS102-18)
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Unit summary
Identifying bacteria starts with their structure and growth. This unit covers the characteristics and classification of bacteria and fungi, bacterial anatomy, nutrition and growth requirements, the growth curve, synchronous, static and continuous culture, culture media and aerobic and anaerobic culture methods.
After this unit you can
- Classify bacteria and fungi
- Describe bacterial anatomy
- Explain nutrition, growth requirements and the growth curve
- Classify culture media and describe aerobic and anaerobic culture
PTU syllabus topics
- General characteristics and classification of bacteria and fungi
- bacterial anatomy
- nutrition and growth requirements
- the bacterial growth curve
- synchronous/static/continuous cultures
- classification of culture media (solid, liquid, semisolid, synthetic, basal, enriched, selective, differential, transport, preservation, anaerobic)
- aerobic and anaerobic culture methods
- 1Lag phase
Adjusting, no division yet
- 2Log (exponential) phase
Rapid division
- 3Stationary phase
Growth = death
- 4Death (decline) phase
Cells die faster than they divide
Topic 1
Classification of bacteria and fungi
Shape
Cocci (round), bacilli (rods), vibrios (comma), spirilla, spirochaetes
Staphylococcus, E. coli, Vibrio cholerae, Treponema
Arrangement of cocci
Pairs, chains, clusters, tetrads
Pneumococcus, Streptococcus, Staphylococcus
Gram stain
Gram-positive (purple), Gram-negative (pink)
Staphylococcus vs E. coli
Oxygen requirement
Obligate aerobes, facultative anaerobes, microaerophiles, obligate anaerobes
M. tuberculosis, E. coli, Campylobacter, Clostridium
- Yeasts
- Unicellular, budding — Cryptococcus
- Yeast-like fungi
- Pseudohyphae — Candida
- Moulds (filamentous)
- Hyphae and mycelium — Aspergillus
- Dimorphic fungi
- Yeast at 37 °C, mould at 25 °C — Histoplasma
Topic 2
Bacterial anatomy
Cell wall
Peptidoglycan; thick in Gram-positive, thin with outer membrane (LPS) in Gram-negative
Shape, protection; target of penicillin
Cell membrane
Phospholipid bilayer
Transport, respiration
Capsule
Polysaccharide layer
Resists phagocytosis — virulence
Flagella
Protein filaments
Motility
Pili (fimbriae)
Hair-like projections
Adhesion; sex pili transfer DNA
Spores
Resistant dormant forms
Survival — Bacillus, Clostridium
Nucleoid and plasmids
Circular DNA; extra DNA
Genetics; antibiotic resistance
Ribosomes
70S
Protein synthesis; target of antibiotics
Topic 3
Nutrition and growth requirements
- Nutrients
- Carbon, nitrogen, sulphur, phosphorus, growth factors (vitamins)
- Temperature
- Mesophiles (most pathogens, 25–40 °C, optimum 37 °C), psychrophiles, thermophiles
- pH
- Most 7.2–7.6; Vibrio prefers alkaline (8.2)
- Oxygen
- Aerobes to anaerobes
- Carbon dioxide
- Capnophiles need 5–10% CO₂ — Neisseria
- Moisture and osmotic pressure
- Water essential; halophiles tolerate salt
- Nutritional types: autotrophs (CO₂ as carbon) and heterotrophs (organic carbon — all pathogens); phototrophs and chemotrophs.
Topic 4
The bacterial growth curve
- 1Lag phase
Adapting; no increase in number
- 2Log (exponential) phase
Rapid binary fission; most sensitive to antibiotics
- 3Stationary phase
Nutrients run out; growth equals death; spores and exotoxins form
- 4Decline (death) phase
Cells die exponentially
- Generation time: time for the population to double — about 20 minutes for E. coli, about 18 hours for M. tuberculosis.
Topic 5
Synchronous, static and continuous culture
Static (batch) culture
Fixed medium in a closed vessel; follows the growth curve
Routine diagnostics
Continuous culture
Fresh medium added and culture removed at the same rate — chemostat, turbidostat
Keeps cells in log phase; industry
Synchronous culture
All cells divide at the same time (by filtration or temperature shifts)
Studying the cell cycle
Topic 6
Culture media
Basal (simple)
Basic nutrients
Nutrient broth, peptone water
Enriched
Basal medium plus blood, serum or egg
Blood agar, chocolate agar
Selective
Inhibits unwanted organisms
MacConkey (bile salts), Löwenstein–Jensen, TCBS
Enrichment (liquid)
Favours one organism in broth
Selenite F broth (Salmonella), alkaline peptone water (Vibrio)
Differential (indicator)
Shows a reaction as colour
MacConkey — lactose fermenters pink
Transport
Keeps organisms alive without growth
Stuart's, Amies, Cary–Blair
Anaerobic
Supports anaerobes
Robertson's cooked meat, thioglycollate broth
Synthetic
Chemically defined
Davis–Mingioli medium
- By consistency: solid (1.5–2% agar), semisolid (0.2–0.5% agar — motility) and liquid (broth). Preservation media: glycerol broth, cooked meat, lyophilisation for stock cultures.
Topic 7
Aerobic and anaerobic culture methods
- Streak plate
- Isolates pure colonies
- Lawn culture
- Antibiotic sensitivity testing
- Pour plate
- Counts viable bacteria
- Stab culture
- Motility and storage
- Liquid culture
- Blood culture, large yields
- McIntosh–Fildes anaerobic jar
- Hydrogen with palladium catalyst removes oxygen
- Gas-Pak system
- Envelope generating H₂ and CO₂
- Reducing agents
- Thioglycollate, cooked meat
- Anaerobic chamber (glove box)
- Oxygen-free workspace
- Indicator
- Methylene blue or resazurin colourless when anaerobic
Key terms
- Peptidoglycan
- Polymer forming the bacterial cell wall
- Capsule
- Polysaccharide layer resisting phagocytosis
- Generation time
- Time for a bacterial population to double
- Selective medium
- Medium inhibiting unwanted organisms
- Facultative anaerobe
- Organism growing with or without oxygen
Quick revision
- Shapes and arrangements; Gram reaction; oxygen needs; yeasts, moulds, dimorphic fungi.
- Cell wall, capsule, flagella, pili, spores, plasmids.
- Growth requirements; growth curve phases.
- Batch, continuous, synchronous cultures.
- Media types; streak, pour, lawn, stab; anaerobic jar and Gas-Pak.
Important exam questions
Practice questions written to the PTU exam pattern for this unit's syllabus: short answers (Section A style) and long answers (Sections B and C style).
Short-answer questions
- Q1.Name the shapes of bacteria.
- Q2.Give one difference between Gram-positive and Gram-negative cell walls.
- Q3.In which phase are bacteria most sensitive to antibiotics?
- Q4.Distinguish selective and differential media.
- Q5.Give an example of a transport medium.
- Q6.How does a Gas-Pak create anaerobic conditions?
Long-answer questions
- Q1.Describe the anatomy of a bacterial cell.
- Q2.Explain the bacterial growth curve.
- Q3.Classify culture media with examples.
- Q4.Describe aerobic and anaerobic culture methods.
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